contig : the chromosome/scaffold/contig location of this candidate 	
position : the 1-based position of this candidate on the given contig 	
context : genomic context of the mutation	
ref_allele : the reference allele for this candidate 	
alt_allele : the mutant (alternate) allele for this candidate 	
tumour_name : name of the tumor sample as given on the command line, or extracted from the BAM 		
normal_name : name of the normal as given on the command line, or extracted from the BAM 	
score : for future development (info not available) 	
dbsnp_site : is this a dbsnp site as defined by the dbsnp bitmask supplied to the caller 	
covered : was the site powered to detect a mutation (80% power for a 0.3 allelic fraction mutation) 	
power : tumor_power * normal_power 	
tumor_power : given the tumor sequencing depth, what is the power to detect a mutation at 0.3 allelic fraction 	
normal_power : given the normal sequencing depth, what power did we have to detect (and reject) this as a germline variant 	
normal_power_nsp : (function not yet available)
normal_power_wsp : (function not yet available)
total_reads : total number of reads mapping on this site 	
map_Q0_reads : total number of mapping quality zero reads in the tumor and normal at this locus 
init_t_lod : deprecated 	
t_lod_fstar : CORE STATISTIC: Log of (likelihood tumor event is real / likelihood event is sequencing error ) 	
t_lod_fstar_forward :  LOD score threhold for forward chain	
t_lod_fstar_reverse :  LOD score threhold for reverse chain	
tumor_f : allelic fraction of this candidated based on read counts 	
contaminant_fraction : estimate of contamination fraction used (supplied or defaulted) 	
contaminant_lod : log likelihood of ( event is contamination / event is sequencing error ) 	
t_q20_count :	(function not yet available)
t_ref_count : count of reference alleles in tumor 	
t_alt_count : count of alternate alleles in tumor 	
t_ref_sum : sum of quality scores of reference alleles in tumor 	
t_alt_sum : sum of quality scores of alternate alleles in tumor 	
t_ref_max_mapq : required maximum reference allele mapping quality score
t_alt_max_mapq : required maximum alternative allele mapping quality score
t_ins_count : count of insertion events at this locus in tumor 	
t_del_count : count of deletion events at this locus in tumor 	
normal_best_gt : most likely genotype in the normal 	
init_n_lod : log likelihood of ( normal being reference / normal being altered ) 	
normal_f :	(function not yet available)
n_q20_count : (function not yet available)
n_ref_count : count of reference alleles in normal 	
n_alt_count : count of alternate alleles in normal 	
n_ref_sum : sum of quality scores of reference alleles in normal 	
n_alt_sum : sum of quality scores of alternate alleles in normal 	
power_to_detect_positive_strand_artifact :	statistical threhold to detect positive strand artifact 
power_to_detect_negative_strand_artifact :	statistical threhold to detect negative strand artifact
strand_bias_counts 	: counts of strand bias in tumor and normal samples
tumor_alt_fpir_median : median distance from the start/end of the read to alternative allele in forward chain	
tumor_alt_fpir_mad 	:  deviation of median distance from the start/end of the read to  alternative allele in forward chain 
tumor_alt_rpir_median : median distance from the start/end of the read to alternative allele in reverse chain		
tumor_alt_rpir_mad 	:  deviation of median distance from the start/end of the read to  alternative allele in reverse chain 
observed_in_normals_count : (function not yet available)
failure_reasons : for future development (info not available) 
judgement : final judgement of site KEEP or REJECT (not enough evidence or artifact) 	
alt_ref_count_ratio : ratio between the alternative allele and the reference allele
Hugo_Symbol : HUGO symbol for the gene (HUGO symbols are always in all caps). If no gene exists within 3kb enter "Unknown". 	
Entrez_Gene_Id : Entrez gene ID (an integer). If no gene exists within 3kb enter "0". 	
NCBI_Build : Any TGCA accepted genome identifier. Can be string, integer or a float. 	
Chromosome : Chromosome number without "chr" prefix that contains the gene. 	
Start_position 	
End_position 	
Strand : Genomic strand of the reported allele. Variants should always be reported on the positive genomic strand. (Currently, only the positive strand is an accepted value). 	
Variant_Classification : Translational effect of variant allele. 	
Variant_Type : Type of mutation. TNP (tri-nucleotide polymorphism) is analogous to DNP but for 3 consecutive nucleotides. ONP (oligo-nucleotide polymorphism) is analogous to TNP but for consecutive runs of 4 or more. 	
Reference_Allele : The plus strand reference allele at this position. Include the sequence deleted for a deletion, or "-" for an insertion. 	
Tumor_Seq_Allele1 : Primary data genotype. Tumor sequencing (discovery) allele 1. " -" for a deletion represent a variant. "-" for an insertion represents wild-type allele. Novel inserted sequence for insertion should not include flanking reference bases. 	
Tumor_Seq_Allele2 : Primary data genotype. Tumor sequencing (discovery) allele 2. " -" for a deletion represents a variant. "-" for an insertion represents wild-type allele. Novel inserted sequence for insertion should not include flanking reference bases. 	
dbSNP_RS : Latest dbSNP rs ID (dbSNP_ID) or "novel" if there is no dbSNP record. source: http://ncbi.nlm.nih.gov/projects/SNP/ 	
dbSNP_Val_Status : dbSNP validation status. Semicolon- separated list of validation statuses. 	
Genome_Change : String describing '+' strand genomic coordinates and alleles. 	
Annotation_Transcript : Ensembl transcript ID of transcript used for annotation. 	
Transcript_Strand : Strand orientation of the above transcript. 	
Transcript_Exon : Indicates the exon affected by the mutation. 	
Transcript_Position : Describes absolute start and end coordinates (separated by a underscore characer) with respect to the reference transcript used in the Annotation_Transcript column. Note these coordinates will differ from the coding region coordinates used in the cDNA_Change and Codon_Change columns. Only one number will be provided if the start and end coordinates are the same. 	
cDNA_Change : Coding positon and alleles. Coordinates are coding sequence coordinates. 	
Codon_Change : String describing transcript coordinates and alleles in context of codon sequences involved. 	
Protein_Change : Protein postion and alleles involved. 	
Other_Transcripts : HUGO symbol, Ensembl transcript id, variant classifcation and protein change of other transcripts overlapping with mutation. 	
Refseq_mRNA_Id : RefSeq transcript ID. 	
Refseq_prot_Id : Refseq protein ID. 	
SwissProt_acc_Id : UniProt accession ID. 	
SwissProt_entry_Id : UniProt entry name ID. 	
Description : If available, description text for transcript. 	
UniProt_AApos : UniProt protein position used to derive position-specific annotations. This can differ from the protein position listed in the 'Protein_Change' field if the UCSC and Uniprot protein sequeneces differ. 	
UniProt_Region : Overlapping UniProt regions of interest (e.g. functional domain or repeat region). 	
UniProt_Site : Overlapping UniProt single amino acid sites of interest (e.g. cleavage or inhibitory sites for proteases). 	
UniProt_Natural_Variations : Overlapping UniProt variants of interest (e.g. polymorphisms or disease-associated mutations). 	
UniProt_Experimental_Info : Overlapping UniProt sites with experimental data (e.g. mutagenesis data leading to protein activity inhibition). 	
GO_Biological_Process : Gene Ontology terms describing pathways and processes UniProt protein is involved in. 	
GO_Cellular_Component : Gene Ontology terms describing localization of given UniProt protein. 	
GO_Molecular_Function : Gene Ontology terms describing molecular activity of given UniProt protein. 	
COSMIC_overlapping_mutations : Protein changes of overlapping alterations. Number of samples in COSMIC with said mutation is in parentheses. 	
COSMIC_fusion_genes : Gene symbols of fusion events involving gene in COSMIC. Number of samples in COSMIC with said mutation is in parentheses. 	
COSMIC_tissue_types_affected : Tissue type summary of tumor samples involving gene in COSMIC. Number of samples in COSMIC is in parentheses. 	
COSMIC_total_alterations_in_gene : Total numbers of records for gene in COSMIC 	
Tumorscape_Amplification_Peaks : Overlapping significant GISTIC aplification focal peaks from Tumorscape. (Number of genes in peak and q-value of peaks is in parentheses). Only peak regions with a q-value <= 0.20 are reported. 	
Tumorscape_Deletion_Peaks : Overlapping significant GISTIC deletion focal peaks from Tumorscape. (Number of genes in peak and q-value of peaks is in parentheses). Only peak regions with a q-value <= 0.20 are reported. 	
TCGAscape_Amplification_Peaks : Overlapping significant GISTIC amplification focal peaks from TCGAscape (Number of genes in peak and q-value of peaks is in parentheses). Only peak regions with a q-value <= 0.20 are reported. 	
TCGAscape_Deletion_Peaks : Overlapping significant GISTIC deletion focal peaks from TCGAscape. (Number of genes in peak and q-value of peaks is in parentheses). Only peak regions with a q-value <= 0.20 are reported. 	
DrugBank : Listing of compounds from DrugBank known to interact with genes (DrugBank compound ID in parentheses). 	
ref_context : Genomic sequence at variant locus with additional 10 bp of flanking sequence on either side. 	
gc_content : Fraction of G or C bases in flanking 100 bp of variant locus 	
CCLE_ONCOMAP_overlapping_mutations : Protein change of overlapping mutations in CCLE Oncomap dataset. Cell line name and lineage are provided in parentheses. 	
CCLE_ONCOMAP_total_mutations_in_gene : Total number of mutations in CCLE Oncomap data for this gene. 	
CGC_Mutation_Type : Type of mutations reported for this gene in the Cancer Gene Census. 	
CGC_Translocation_Partner : Known translocation partner gene as reported in Cancer Gene Census 	
CGC_Tumor_Types_Somatic : Tumor types with somatic alterations in this gene as reported in the Cancer Gene Census. 	
CGC_Tumor_Types_Germline : Tumor types with germline alterations in this gene as reported in the Cancer Gene Census. 	
CGC_Other_Diseases : Other diseases/syndromes with alterations in this gene as reported in Cancer Gene Census. 	
DNARepairGenes_Role : Known DNA repair roles for this gene as reported in Wood et al. 	
FamilialCancerDatabase_Syndromes : Familial cancer syndromes with alteration in this gene as reported in the Familial Cancer Database. 	
MUTSIG_Published_Results : Published MutSig analyses with gene in signifcant results. Gene rank and q-value are provided in parentheses. 	
OREGANNO_ID : ID for ORegAnno regulatory regions, transcription factor binding sites, and regulatory polymorphisms as reported in the UCSC Genome Browser. 	
OREGANNO_Values : Key-value pairs from ORegAnno UCSC track describing regulatory element. More information can be found here. 	
1000Genome_AA : 1000 Genomes annotation, Ancestral Allele 	
1000Genome_AC : 1000 Genomes annotation, Alternate Allele Count 	
1000Genome_AF : 1000 Genomes annotation, Global Allele Frequency based on AC/AN" 	
1000Genome_AFR_AF : 1000 Genomes annotation, Allele Frequency for samples from AFR based on AC/AN 	
1000Genome_AMR_AF : 1000 Genomes annotation, Allele Frequency for samples from AMR based on AC/AN 	
1000Genome_AN : 1000 Genomes annotation, Total Allele Count 	
1000Genome_CIEND : 1000 Genomes annotation, Confidence interval around END for imprecise variants 	
1000Genome_CIPOS : 1000 Genomes annotation, Confidence interval around POS for imprecise variants 	
1000Genome_CS 	
1000Genome_DP 	
1000Genome_EAS_AF 	
1000Genome_END : 1000 Genomes annotation, End position of the variant described in this record 	
1000Genome_EUR_AF : 1000 Genomes annotation, Allele Frequency for samples from EUR based on AC/AN 	
1000Genome_IMPRECISE 	
1000Genome_MC 	
1000Genome_MEINFO 	
1000Genome_MEND 	
1000Genome_MLEN 	
1000Genome_MSTART 	
1000Genome_NS 	
1000Genome_SAS_AF 	
1000Genome_SVLEN : 1000 Genomes annotation, Difference in length between REF and ALT alleles 	
1000Genome_SVTYPE : 1000 Genomes annotation, Type of structural variant 	
1000Genome_TSD 	
ACHILLES_Lineage_Results_Top_Genes : Lineages in ACHILLES dataset with gene in top 200 scoring genes. Rank score of gene followed by individual hairpin ranks for given gene are provided in parentheses. 	
CGC_Cancer_Germline_Mut : Cancer Gene Census annotation, "yes" if variant is in a gene that is mutated in the germline predisposing to cancer. 	
CGC_Cancer_Molecular_Genetics : Cancer Gene Census annotation, Indicates whether variants in mutated gene are dominant or recessive. 	
CGC_Cancer_Somatic_Mut : Cancer Gene Census annotation, "yes" if variant is in a gene that is somatically mutated in cancer. 	
CGC_Cancer_Syndrome : Cancer related syndromes with alterations in this gene as reported in Cancer Gene Census. 	
CGC_Chr : Cancer Gene Census annotation, Chromosome. 	
CGC_Chr_Band : Cancer Gene Census annotation, Chromosome band. 	
CGC_GeneID : Cancer Gene Census annotation, Entrez gene ID. 	
CGC_Name : Cancer Gene Census annotation, Full gene name. 	
CGC_Other_Germline_Mut : Cancer Gene Census annotation, "yes" if variant is in a gene that is germline mutated in other diseases/syndromes. 	
CGC_Tissue_Type : Cancer Gene Census annotation, Tissue types with mutations in this gene. 	
COSMIC_n_overlapping_mutations : Total number of COSMIC mutations at variant site. 	
COSMIC_overlapping_mutation_descriptions : COSMIC mutation descriptions at variant site. Number of samples in COSMIC is in parentheses. 	
COSMIC_overlapping_primary_sites : Primary site summary of tumor samples with COSMIC mutations at variant site. Number of samples in COSMIC is in parentheses. 	
ClinVar_ASSEMBLY : ClinVar annotation, Assembly 	
ClinVar_HGMD_ID : ClinVar annotation, HGNMD ID 	
ClinVar_SYM : ClinVar annotation, Gene symbol 	
ClinVar_TYPE : ClinVar annotation, Type 	
ClinVar_rs : ClinVar annotation, dbSNP ID 	
ESP_AA : ESP annotation, chimpAllele 	
ESP_AAC : ESP annotation, aminoAcidChange 	
ESP_AA_AC : ESP annotation, African American Allele Count in the order of AltAlleles,RefAllele. For INDELs, A1, A2, or An refers to the N-th alternate allele while R refers to the reference allele. 	
ESP_AA_AGE : ESP annotation, Estimated Variant Age in kilo years for the African American Population 	
ESP_AA_GTC : ESP annotation, African American Genotype Counts in the order of listed GTS 	
ESP_AvgAAsampleReadDepth : ESP annotation, Mean read depth at variant position in African American ESP cohort. 	
ESP_AvgEAsampleReadDepth : ESP annotation, Mean read depth at variant position in European American ESP cohort. 	
ESP_AvgSampleReadDepth : ESP annotation, Mean read depth at variant position in all ESP samples. 	
ESP_CA : ESP annotation, clinicalAssociation 	
ESP_CDP : ESP annotation, cDNAPosition 	
ESP_CG : ESP annotation, consScoreGERP 	
ESP_CP : ESP annotation, scorePhastCons 	
ESP_Chromosome : ESP annotation, Chromosome 	
ESP_DBSNP : ESP annotation, dbSNP version which established the rs_id 	
ESP_DP : ESP annotation, Average Sample Read Depth" 	
ESP_EA_AC : ESP annotation, European American Allele Count in the order of AltAlleles,RefAllele. For INDELs, A1, A2, or An refers to the N-th alternate allele while R refers to the reference allele. 	
ESP_EA_AGE : ESP annotation, Esitmated Variant Age in kilo years for the European American Population 	
ESP_EA_GTC : ESP annotation, European American Genotype Counts in the order of listed GTS 	
ESP_EXOME_CHIP : ESP annotation, Whether a SNP is on the Illumina HumanExome Chip 	
ESP_FG : ESP annotation, functionGVS 	
ESP_GL : ESP annotation, geneList 	
ESP_GM : ESP annotation, accession 	
ESP_GS : ESP annotation, granthamScore 	
ESP_GTC : ESP annotation, Total Genotype Counts in the order of listed GTS 	
ESP_GTS : ESP annotation, Observed Genotypes. For INDELs, A1, A2, or An refers to the N-th alternate allele while R refers to the reference allele. 	
ESP_GWAS_PUBMED : ESP annotation, PubMed records for GWAS hits 	
ESP_MAF : ESP annotation, Minor Allele Frequency in percent in the order of EA,AA,All 	
ESP_PH : ESP annotation, polyPhen 	
ESP_PP : ESP annotation, proteinPosition" 	
ESP_Position : ESP annotation, Genomic position" 	
ESP_TAC : ESP annotation, Total Allele Count in the order of AltAlleles,RefAllele For INDELs, A1, A2, or An refers to the N-th alternate allele while R refers to the reference allele. 
ESP_TotalAAsamplesCovered : ESP annotation, Total African American samples with read coverage at variant site. 	
ESP_TotalEAsamplesCovered : ESP annotation, Total European American samples with read coverage at variant site. 	
ESP_TotalSamplesCovered : ESP annotation, Total ESP samples with read coverage at variant site. 	
Ensembl_so_accession : Ensembl Sequence ontology accession 	
Ensembl_so_term : Ensembl Sequence ontology term 	
Familial_Cancer_Genes_Reference : Familial cancer database reference used. 	
Familial_Cancer_Genes_Synonym : Familial cancer syndrome synonyms with alteration in this gene as reported in the Familial Cancer Database. 	
HGNC_Accession_Numbers 	
HGNC_CCDS_IDs 	
HGNC_Chromosome 	
HGNC_Date_Modified 	
HGNC_Date_Name_Changed 	
HGNC_Date_Symbol_Changed 	
HGNC_Ensembl_Gene_ID 	
HGNC_Ensembl_ID 	
HGNC_Entrez_Gene_ID 	
HGNC_Enzyme_IDs 	
HGNC_Gene_family_description 	
HGNC_HGNC_ID : HGNC annotation, A unique ID provided by the HGNC. See the HGNC help page site for more information. 	
HGNC_Locus_Group 	
HGNC_Locus_Type 	
HGNC_Name_Synonyms 	
HGNC_OMIM_ID 	
HGNC_Previous_Names 	
HGNC_Previous_Symbols 	
HGNC_Primary_IDs 	
HGNC_Pubmed_IDs 	
HGNC_Record_Type 	
HGNC_RefSeq_IDs : HGNC annotation, The Reference Sequence (RefSeq) identifier for that entry, provided by the NCBI. See the HGNC help page site for more information. 	
HGNC_RefSeq 	
HGNC_Secondary_IDs 	
HGNC_Status : HGNC annotation, Indicates whether the gene is classified as "Approved", "Entry withdrawn", or "Symbol withdrawn". See the HGNC help page site for more information. 	
HGNC_Synonyms 	
HGNC_UCSC_ID : HGNC annotation, The UCSC ID is derived from the current build of the UCSC database. See the HGNC help page site for more information. 	
HGNC_UniProt_ID 	
HGNC_VEGA_IDs 	
HGVS_coding_DNA_change : HGVS compliant string describing coding positon and alleles. 	
HGVS_genomic_change : HGVS compliant string describing '+' strand genomic coordinates and alleles. 	
HGVS_protein_change : HGVS compliant string describing protein postion and alleles involved. 	
ORegAnno_bin : UCSC Genome Browser bin for ORegAnno entry. 	
UniProt_alt_uniprot_accessions : Alternative UniProt accession IDs 	
build : User-supplied build value 	
ccds_id : Consensus CDS project ID 	
dbNSFP_1000Gp1_AC : dbNSFP annotation, Alternative allele counts in the whole 1000 genomes phase 1 (1000Gp1) data. 	
dbNSFP_1000Gp1_AF : dbNSFP annotation, Alternative allele frequency in the whole 1000Gp1 data. 	
dbNSFP_1000Gp1_AFR_AC : dbNSFP annotation, Alternative allele counts in the 1000Gp1 African descendent samples. 	
dbNSFP_1000Gp1_AFR_AF : dbNSFP annotation, Alternative allele frequency in the 1000Gp1 African descendent samples. 	
dbNSFP_1000Gp1_AMR_AC : dbNSFP annotation, Alternative allele counts in the 1000Gp1 American descendent samples. 	
dbNSFP_1000Gp1_AMR_AF : dbNSFP annotation, Alternative allele frequency in the 1000Gp1 American descendent samples. 	
dbNSFP_1000Gp1_ASN_AC : dbNSFP annotation, Alternative allele counts in the 1000Gp1 Asian descendent samples. 	
dbNSFP_1000Gp1_ASN_AF : dbNSFP annotation, Alternative allele frequency in the 1000Gp1 Asian descendent samples. 	
dbNSFP_1000Gp1_EUR_AC : dbNSFP annotation, Alternative allele counts in the 1000Gp1 European descendent samples. 	
dbNSFP_1000Gp1_EUR_AF : dbNSFP annotation, Alternative allele frequency in the 1000Gp1 European descendent samples. 	
dbNSFP_Ancestral_allele : dbNSFP annotation, Ancestral allele (based on 1000 genomes reference data). 	
dbNSFP_CADD_phred : dbNSFP annotation, CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores. Please refer to Kircher et al. (2014) Nature Genetics 46(3) 	
dbNSFP_CADD_raw : dbNSFP annotation, CADD raw score for funtional prediction of a SNP. Please refer to Kircher et al. (2014) Nature Genetics 46(3) 	
dbNSFP_CADD_raw_rankscore : dbNSFP annotation, CADD raw scores were ranked among all CADD raw scores in dbNSFP. The rankscore is the ratio of the rank of the score over the total number of CADD raw scores in dbNSFP. Please note the following copyright statement for CADD" 	
dbNSFP_ESP6500_AA_AF : dbNSFP annotation, Alternative allele frequency in the Afrian American samples of the NHLBI GO Exome Sequencing Project (ESP6500 data set). 	
dbNSFP_ESP6500_EA_AF : dbNSFP annotation, Alternative allele frequency in the European American samples of the NHLBI GO Exome Sequencing Project (ESP6500 data set). 	
dbNSFP_Ensembl_geneid : dbNSFP annotation, Ensembl gene id" 	
dbNSFP_Ensembl_transcriptid : dbNSFP annotation, Ensembl transcript ids (separated by ";") 	
dbNSFP_FATHMM_pred : dbNSFP annotation, If a FATHMMori score is <=-1.5 (or rankscore <=0.81415) the corresponding NS is predicted as "D(AMAGING)"; otherwise it is predicted as "T(OLERATED)". Multiple predictions separated by ";" 	
dbNSFP_FATHMM_rankscore : dbNSFP annotation, FATHMMori scores were ranked among all FATHMMori scores in dbNSFP. The rankscore is the ratio of the rank of the score over the total number of FATHMMori scores in dbNSFP. If there are multiple scores, only the most damaging (largest) rankscore is presented. The scores range from 0 to 1. 	
dbNSFP_FATHMM_score : dbNSFP annotation, FATHMM default score (weighted for human inherited-disease mutations with Disease Ontology) (FATHMMori). Scores range from -18.09 to 11.0. Multiple scores separated by ";" Please refer to Shihab et al. (2013) Human Mutation 34(1)" 	
dbNSFP_GERP_NR 	
dbNSFP_GERP_RS 	
dbNSFP_GERP_RS_rankscore 	
dbNSFP_Interpro_domain : dbNSFP annotation, domain or conserved site on which the variant locates. Domain annotations come from Interpro database. The number in the brackets following a specific domain is the count of times Interpro assigns the variant position to that domain, typically coming from different predicting databases. Multiple entries separated by ";". 	
dbNSFP_LRT_Omega : dbNSFP annotation, estimated nonsynonymous-to-synonymous-rate ratio (Omega, reported by LRT)" 	
dbNSFP_LRT_converted_rankscore : dbNSFP annotation, LRTori scores were first converted as LRTnew=1-LRTori*0.5 if Omega<1, or LRTnew=LRTori*0.5 if Omega>=1. Then LRTnew scores were ranked among all LRTnew scores in dbNSFP. The rankscore is the ratio of the rank over the total number of the scores in dbNSFP. The scores range from 0.00166 to 0.85682. 	
dbNSFP_LRT_pred : dbNSFP annotation, LRT prediction, D(eleterious), N(eutral) or U(nknown), which is not solely determined by the score. " 	
dbNSFP_LRT_score : dbNSFP annotation, The original LRT two-sided p-value (LRTori), ranges from 0 to 1. 	
dbNSFP_LR_pred : dbNSFP annotation, Prediction of our LR based ensemble prediction score,"T(olerated)" or "D(amaging)". The score cutoff between "D" and "T" is 0.5. The rankscore cutoff between "D" and "T" is 0.82268. 	
dbNSFP_LR_rankscore : dbNSFP annotation, LR scores were ranked among all LR scores in dbNSFP. The rankscore is the ratio of the rank of the score over the total number of LR scores in dbNSFP. The scores range from 0 to 1. 	
dbNSFP_LR_score : dbNSFP annotation, Our logistic regression (LR) based ensemble prediction score, which incorporated 10 scores (SIFT, PolyPhen-2 HDIV, PolyPhen-2 HVAR, GERP++, MutationTaster, Mutation Assessor, FATHMM, LRT, SiPhy, PhyloP) and the maximum frequency observed in the 1000 genomes populations. Larger value means the SNV is more likely to be damaging. Scores range from 0 to 1. 	
dbNSFP_MutationAssessor_pred : dbNSFP annotation, MutationAssessor's functional impact of a variant " 	
dbNSFP_MutationAssessor_rankscore : dbNSFP annotation, MAori scores were ranked among all MAori scores in dbNSFP. The rankscore is the ratio of the rank of the score over the total number of MAori scores in dbNSFP. The scores range from 0 to 1. 	
dbNSFP_MutationAssessor_score : dbNSFP annotation, MutationAssessor functional impact combined score (MAori). The score ranges from -5.545 to 5.975 in dbNSFP. Please refer to Reva et al. (2011) Nucl. Acids Res. 39(17)" 	
dbNSFP_MutationTaster_converted_rankscore : dbNSFP annotation, The MTori scores were first converted" 	
dbNSFP_MutationTaster_pred : dbNSFP annotation, MutationTaster prediction, "A" ("disease_causing_automatic"), "D" ("disease_causing"), "N" ("polymorphism") or "P" ("polymorphism_automatic"). The score cutoff between "D" and "N" is 0.5 for MTori and 0.328 for the rankscore. 	
dbNSFP_MutationTaster_score : dbNSFP annotation, MutationTaster p-value (MTori), ranges from 0 to 1. 	
dbNSFP_Polyphen2_HDIV_pred : dbNSFP annotation, Polyphen2 prediction based on HumDiv, "D" ("porobably damaging", HDIV score in [0.957,1] or rankscore in [0.52996,0.89917]), "P" ("possibly damaging", HDIV score in [0.453,0.956] or rankscore in [0.34412,0.52842]) and "B" ("benign", HDIV score in [0,0.452] or rankscore in [0.02656,0.34399]). Score cutoff for binary classification is 0.5 for HDIV score or 0.35411 for rankscore, i.e. the prediction is "neutral" if the HDIV score is smaller than 0.5 (rankscore is smaller than 0.35411), and "deleterious" if the HDIV score is larger than 0.5 (rankscore is larger than 0.35411). Multiple entries are separated by ";". 	
dbNSFP_Polyphen2_HDIV_rankscore : dbNSFP annotation, Polyphen2 HDIV scores were first ranked among all HDIV scores in dbNSFP. The rankscore is the ratio of the rank the score over the total number of the scores in dbNSFP. If there are multiple scores, only the most damaging (largest) rankscore is presented. The scores range from 0.02656 to 0.89917. 	
dbNSFP_Polyphen2_HDIV_score : dbNSFP annotation, Polyphen2 score based on HumDiv, i.e. hdiv_prob. The score ranges from 0 to 1. Multiple entries separated by ";". 	
dbNSFP_Polyphen2_HVAR_pred : dbNSFP annotation, Polyphen2 prediction based on HumVar, "D" ("probably damaging", HVAR score in [0.909,1] or rankscore in [0.62955,0.9711]), "P" ("possibly damaging", HVAR in [0.447,0.908] or rankscore in [0.44359,0.62885]) and "B" ("benign", HVAR score in [0,0.446] or rankscore in [0.01281,0.44315]). Score cutoff for binary classification is 0.5 for HVAR score or 0.45998 for rankscore, i.e. the prediction is "neutral" if the HVAR score is smaller than 0.5 (rankscore is smaller than 0.45998), and "deleterious" if the HVAR score is larger than 0.5 (rankscore is larger than 0.45998). Multiple entries are separated by ";". 	
dbNSFP_Polyphen2_HVAR_rankscore : dbNSFP annotation, Polyphen2 HVAR scores were first ranked among all HVAR scores in dbNSFP. The rankscore is the ratio of the rank the score over the total number of the scores in dbNSFP. If there are multiple scores, only the most damaging (largest) rankscore is presented. The scores range from 0.01281 to 0.9711. 	
dbNSFP_Polyphen2_HVAR_score : dbNSFP annotation, Polyphen2 score based on HumVar, i.e. hvar_prob. The score ranges from 0 to 1. Multiple entries separated by ";". 	
dbNSFP_RadialSVM_pred : dbNSFP annotation, Prediction of our SVM based ensemble prediction score,"T(olerated)" or "D(amaging)". The score cutoff between "D" and "T" is 0. The rankscore cutoff between "D" and "T" is 0.83357. 	
dbNSFP_RadialSVM_rankscore : dbNSFP annotation, RadialSVM scores were ranked among all RadialSVM scores in dbNSFP. The rankscore is the ratio of the rank of the screo over the total number of RadialSVM scores in dbNSFP. The scores range from 0 to 1. 	
dbNSFP_RadialSVM_score : dbNSFP annotation, Our support vector machine (SVM) based ensemble prediction score, which incorporated 10 scores (SIFT, PolyPhen-2 HDIV, PolyPhen-2 HVAR, GERP++, MutationTaster, Mutation Assessor, FATHMM, LRT, SiPhy, PhyloP) and the maximum frequency observed in the 1000 genomes populations. Larger value means the SNV is more likely to be damaging. Scores range from -2 to 3 in dbNSFP. 	
dbNSFP_Reliability_index : dbNSFP annotation, Number of observed component scores (except the maximum frequency in the 1000 genomes populations) for RadialSVM and LR. Ranges from 1 to 10. As RadialSVM and LR scores are calculated based on imputed data, the less missing component scores, the higher the reliability of the scores and predictions. 	
dbNSFP_SIFT_converted_rankscore : dbNSFP annotation, SIFTori scores were first converted to SIFTnew=1-SIFTori, then ranked among all SIFTnew scores in dbNSFP. The rankscore is the ratio of the rank the SIFTnew score over the total number of SIFTnew scores in dbNSFP. If there are multiple scores, only the most damaging (largest) rankscore is presented. The rankscores range from 0.02654 to 0.87932. 	
dbNSFP_SIFT_pred : dbNSFP annotation, If SIFTori is smaller than 0.05 (rankscore>0.55) the corresponding NS is predicted as "D(amaging)"; otherwise it is predicted as "T(olerated)". Multiple predictions separated by ";" 	
dbNSFP_SIFT_score : dbNSFP annotation, SIFT score (SIFTori). Scores range from 0 to 1. The smaller the score the more likely the SNP has damaging effect. Multiple scores separated by ";". 	
dbNSFP_SLR_test_statistic : dbNSFP annotation, SLR test statistic for testing natural selection on codons. A negative value indicates negative selection, and a positive value indicates positive selection. Larger magnitude of the value suggests stronger evidence. 	
dbNSFP_SiPhy_29way_logOdds : dbNSFP annotation, SiPhy score based on 29 mammals genomes. The larger the score, the more conserved the site. 	
dbNSFP_SiPhy_29way_logOdds_rankscore : dbNSFP annotation, SiPhy_29way_logOdds scores were ranked among all SiPhy_29way_logOdds scores in dbNSFP. The rankscore is the ratio of the rank of the score over the total number of SiPhy_29way_logOdds scores in dbNSFP. 	
dbNSFP_SiPhy_29way_pi : dbNSFP annotation, The estimated stationary distribution of A, C, G and T at the site, using SiPhy algorithm based on 29 mammals genomes. " 	
dbNSFP_UniSNP_ids : dbNSFP annotation, rs numbers from UniSNP, which is a cleaned version of dbSNP build 129, in format" 	
dbNSFP_Uniprot_aapos : dbNSFP annotation, amino acid position as to Uniprot. Multiple entries separated by ";". 	
dbNSFP_Uniprot_acc : dbNSFP annotation, Uniprot accession number. Multiple entries separated by ";". 	
dbNSFP_Uniprot_id : dbNSFP annotation, Uniprot ID number. Multiple entries separated by ";". 	
dbNSFP_aaalt : dbNSFP annotation, alternative amino acid "." if the variant is a splicing site SNP (2bp on each end of an intron) 	
dbNSFP_aapos : dbNSFP annotation, amino acid position as to the protein. "-1" if the variant is a splicing site SNP (2bp on each end of an intron) 	
dbNSFP_aapos_FATHMM : dbNSFP annotation, ENSP id and amino acid positions corresponding to FATHMM scores. Multiple entries separated by ";" 	
dbNSFP_aapos_SIFT : dbNSFP annotation, ENSP id and amino acid positions corresponding to SIFT scores. Multiple entries separated by ";" 	
dbNSFP_aaref : dbNSFP annotation, reference amino acid. "." if the variant is a splicing site SNP (2bp on each end of an intron) 	
dbNSFP_cds_strand : dbNSFP annotation, coding sequence (CDS) strand (+ or -) 	
dbNSFP_codonpos : dbNSFP annotation, position on the codon (1, 2 or 3) 	
dbNSFP_fold-degenerate : dbNSFP annotation, degenerate type (0, 2 or 3) 	
dbNSFP_genename : dbNSFP annotation, gene name; if the NScan be assigned to multiple genes, gene names are separated by ";" 	
dbNSFP_hg18_pos : dbNSFP annotation, physical position on the chromosome as to hg18 (1-based coordinate) 	
dbNSFP_phastCons100way_vertebrate : dbNSFP annotation, phastCons conservation score based on the multiple alignments of 100 vertebrate genomes (including human). The larger the score, the more conserved the site. 	
dbNSFP_phastCons100way_vertebrate_rankscore : dbNSFP annotation, phastCons100way_vertebrate scores were ranked among all phastCons100way_vertebrate scores in dbNSFP. The rankscore is the ratio of the rank of the score over the total number of phastCons100way_vertebrate scores in dbNSFP. 	
dbNSFP_phastCons46way_placental : dbNSFP annotation, phastCons conservation score based on the multiple alignments of 33 placental mammal genomes (including human). The larger the score, the more conserved the site. 	
dbNSFP_phastCons46way_placental_rankscore : dbNSFP annotation, phastCons46way_placental scores were ranked among all phastCons46way_placental scores in dbNSFP. The rankscore is the ratio of the rank of the score over the total number of phastCons46way_placental scores in dbNSFP. 	
dbNSFP_phastCons46way_primate : dbNSFP annotation, phastCons conservation score based on the multiple alignments of 10 primate genomes (including human). The larger the score, the more conserved the site. 	
dbNSFP_phastCons46way_primate_rankscore : dbNSFP annotation, phastCons46way_primate scores were ranked among all phastCons46way_primate scores in dbNSFP. The rankscore is the ratio of the rank of the score over the total number of phastCons46way_primate scores in dbNSFP. 	
dbNSFP_phyloP100way_vertebrate : dbNSFP annotation, phyloP (phylogenetic p-values) conservation score based on the multiple alignments of 100 vertebrate genomes (including human). The larger the score, the more conserved the site. 	
dbNSFP_phyloP100way_vertebrate_rankscore : dbNSFP annotation, phyloP100way_vertebrate scores were ranked among all phyloP100way_vertebrate scores in dbNSFP. The rankscore is the ratio of the rank of the score over the total number of phyloP100way_vertebrate scores in dbNSFP. 	
dbNSFP_phyloP46way_placental : dbNSFP annotation, phyloP (phylogenetic p-values) conservation score based on the multiple alignments of 33 placental mammal genomes (including human). The larger the score, the more conserved the site. 	
dbNSFP_phyloP46way_placental_rankscore : dbNSFP annotation, phyloP46way_placental scores were ranked among all phyloP46way_placental scores in dbNSFP. The rankscore is the ratio of the rank of the score over the total number of phyloP46way_placental scores in dbNSFP. 	
dbNSFP_phyloP46way_primate : dbNSFP annotation, phyloP (phylogenetic p-values) conservation score based on the multiple alignments of 10 primate genomes (including human). The larger the score, the more conserved the site. 	
dbNSFP_phyloP46way_primate_rankscore : dbNSFP annotation, phyloP46way_primate scores were ranked among all phyloP46way_primate scores in dbNSFP. The rankscore is the ratio of the rank of the score over the total number of phyloP46way_primate scores in dbNSFP. 	
dbNSFP_refcodon : dbNSFP annotation, reference codon 	
gencode_transcript_name : Gencode transcript name 	
gencode_transcript_status : Gencode transcript status 	
gencode_transcript_tags : Gencode transcript tags 	
gencode_transcript_type : Gencode transcript type 	
gene_id : Internal gene ID 	
gene_type : Type of gene used for variant annotation 	
havana_transcript : HAVANA transcript ID 	
secondary_variant_classification : Oncotator secondary variant classification 	
strand : Strand orientation of variant genomic coordinates 	
transcript_id : Transcript ID used for variant annotation 